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Sowpati Lab

Centre for Cellular and Molecular Biology
Hyderabad, India

Genomics • Epigenetics • Algorithms • Big Data

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DNA present within cells, collectively known as the genome, is the instruction manual read by the cellular machinery to live and function. My lab is interested in understanding how the variation in genomes of Indians predisposes them to disparities in health and disease. We study this at two levels. First, we identify genetic variation of individuals using cutting-edge high throughput sequencing technologies. As part of large nation-wide population genomics programs, we map the natural variation in healthy genomes. In particular, our interests lie in two classes of variations known as structural variations and tandem repeats. We also study how the same DNA sequence can give rise to different phenotypes, as observed in various cell types of a single organism. Despite having an identical genome, cells can be regulated differently via epigenetic mechanisms that result in cell specific gene expression patterns. Using single cell genomic technologies, we analyze the gene expression and epigenetic profiles of various cells to understand cell heterogeneity. Finally, we develop new computational methods that enable faster and better analysis of complex biological data, as well as more interactive and intuitive data visualization.

Research Themes

Recent Publications

Nuclear compression-mediated DNA damage drives ATR-dependent Lamin expression and mouse ESC differentiation

Roy T, Ghosh S, Piplani N, Sthanam LK, Tiwary N, Dhar S, Konyak WCW, Panigrahi SS, Singh P, Sowpati DT, Nair S, Kumar S, Shekar PC, Sen S.

Programmed cell revival from imminent cell death enhances tissue repair and regeneration

Dhar K, Jena KK, Mehto S, Sahu R, Murmu KC, Mahajan AA, Behera S, Putchala RK, Mathew RJ, Bal R, Kundu S, Das SK, Chauhan S, Satapathy S, Yadav R, Priyadarsini S, Padala KR, Namdigalla P, Mishra S, Muralidhara P, Bansal K, Sannula K, Prasad P, Bokara KK, Sowpati DT, Ghosh-Roy A, Mahapatra PK, Khadilkar RJ, Yelagandula R, Chauhan S.

Analysis of tandem repeats in seven telomere-to-telomere primate genomes

Sharma A, Sowpati DT.

Elucidating neural molecular mechanisms underlying metabolic disorders-induced neuropsychiatric disorders in mice on prolonged high fructose diet

Singh S, Singh NK, Srividya K, Bhat UA, Sowpati DT, Chakravarty S, Kumar A.

ATaRVa: Analysis of Tandem Repeat Variation from Long Read Sequencing data

Abishek Kumar Sivakumar, Sriram Sudarsanam, Anukrati Sharma, Akshay Kumar Avvaru, Divya Tej Sowpati

Mapping genetic diversity with the GenomeIndia project

Bhattacharyya C, Subramanian K, Uppili B, Biswas NK, Ramdas S, Tallapaka KB, Arvind P, Rupanagudi KV, Maitra A, Nagabandi T, De T, Singh K, Sharma P, Sharma N, Raghav SK, Prasad P, Soniya EV, Jaleel A, Nelson Sathi S, Joshi M, Joshi C, Lahiri M, Dixit S, Shashidhara LS, Senthil Kumar N, Lalhruaitluanga H, Nundanga L, Shivakumar V, Venkatasubramanian G, Rao NP, Ganie MA, Wani IA, Jha G, Dalal A, Bashyam MD, Varadwaj PK, Bs S, Simmhan Y, Jain C, Sundar D, Gupta I, Yadav P, Sinha H, Narayanan M, Raman K, Padinjat R, Sabarinathan R; GenomeIndia Consortium; Narahari Y, Ravindranath V, Thangaraj K, Sowpati DT, Faruq M, Basu A, Kahali B.
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Like what we do? Interested in joining us?
Write to tej at ccmb dot res dot in with your CV and cover letter

CSIR - CCMB, Hyderabad 500007
Room 509, East wing, Fourth floor